Source code for bokeh.io.notebook

#-----------------------------------------------------------------------------
# Copyright (c) 2012 - 2017, Anaconda, Inc. All rights reserved.
#
# Powered by the Bokeh Development Team.
#
# The full license is in the file LICENSE.txt, distributed with this software.
#-----------------------------------------------------------------------------
'''

'''

#-----------------------------------------------------------------------------
# Boilerplate
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from __future__ import absolute_import, division, print_function, unicode_literals

import logging
log = logging.getLogger(__name__)

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# Imports
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# Standard library imports
import json
from warnings import warn
from uuid import uuid4

# External imports

# Bokeh imports
from .state import curstate
from ..util.serialization import make_id

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# Globals and constants
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HTML_MIME_TYPE = 'text/html'

JS_MIME_TYPE   = 'application/javascript'

LOAD_MIME_TYPE = 'application/vnd.bokehjs_load.v0+json'

EXEC_MIME_TYPE = 'application/vnd.bokehjs_exec.v0+json'

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# General API
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[docs]class CommsHandle(object): ''' ''' _json = {} def __init__(self, comms, cell_doc): self._cellno = None try: from IPython import get_ipython ip = get_ipython() hm = ip.history_manager p_prompt = list(hm.get_tail(1, include_latest=True))[0][1] self._cellno = p_prompt except Exception as e: log.debug("Could not get Notebook cell number, reason: %s", e) self._comms = comms self._doc = cell_doc # Our internal copy of the doc is in perpetual "hold". Events from the # originating doc will be triggered and collected it it. Events are # processed/cleared when push_notebook is called for this comms handle self._doc.hold() def _repr_html_(self): if self._cellno is not None: return "<p><code>&lt;Bokeh Notebook handle for <strong>In[%s]</strong>&gt;</code></p>" % str(self._cellno) else: return "<p><code>&lt;Bokeh Notebook handle&gt;</code></p>" @property def comms(self): return self._comms @property def doc(self): return self._doc # Adding this method makes curdoc dispatch to this Comms to handle # and Document model changed events. If we find that the event is # for a model in our internal copy of the docs, then trigger the # internal doc with the event so that it is collected (until a # call to push_notebook processes and clear colleted events) def _document_model_changed(self, event): if event.model._id in self.doc._all_models: self.doc._trigger_on_change(event)
[docs]def install_notebook_hook(notebook_type, load, show_doc, show_app, overwrite=False): ''' Install a new notebook display hook. Bokeh comes with support for Jupyter notebooks built-in. However, there are other kinds of notebooks in use by different communities. This function provides a mechanism for other projects to instruct Bokeh how to display content in other notebooks. This function is primarily of use to developers wishing to integrate Bokeh with new notebook types. Args: notebook_type (str) : A name for the notebook type, e.e. ``'Jupyter'`` or ``'Zeppelin'`` If the name has previously been installed, a ``RuntimeError`` will be raised, unless ``overwrite=True`` load (callable) : A function for loading BokehJS in a notebook type. The function will be called with the following arguments: .. code-block:: python load( resources, # A Resources object for how to load BokehJS verbose, # Whether to display verbose loading banner hide_banner, # Whether to hide the output banner entirely load_timeout # Time after which to report a load fail error ) show_doc (callable) : A function for displaying Bokeh standalone documents in the notebook type. This function will be called with the following arguments: .. code-block:: python show_doc( obj, # the Bokeh object to display state, # current bokeh.io "state" notebook_handle # whether a notebook handle was requested ) If the notebook platform is capable of supporting in-place updates to plots then this function may return an opaque notebook handle that can be used for that purpose. The handle will be returned by ``show()``, and can be used by as appropriate to update plots, etc. by additional functions in the library that installed the hooks. show_app (callable) : A function for displaying Bokeh applications in the notebook type. This function will be called with the following arguments: .. code-block:: python show_app( app, # the Bokeh Application to display state, # current bokeh.io "state" notebook_url # URL to the current active notebook page ) overwrite (bool, optional) : Whether to allow an existing hook to be overwritten by a new definition (default: False) Returns: None Raises: RuntimeError If ``notebook_type`` is already installed and ``overwrite=False`` ''' if notebook_type in _HOOKS and not overwrite: raise RuntimeError("hook for notebook type %r already exists" % notebook_type) _HOOKS[notebook_type] = dict(load=load, doc=show_doc, app=show_app)
[docs]def push_notebook(document=None, state=None, handle=None): ''' Update Bokeh plots in a Jupyter notebook output cells with new data or property values. When working the the notebook, the ``show`` function can be passed the argument ``notebook_handle=True``, which will cause it to return a handle object that can be used to update the Bokeh output later. When ``push_notebook`` is called, any property updates (e.g. plot titles or data source values, etc.) since the last call to ``push_notebook`` or the original ``show`` call are applied to the Bokeh output in the previously rendered Jupyter output cell. Several example notebooks can be found in the GitHub repository in the :bokeh-tree:`examples/howto/notebook_comms` directory. Args: document (Document, optional) : A :class:`~bokeh.document.Document` to push from. If None, uses ``curdoc()``. (default: None) state (State, optional) : A :class:`State` object. If None, then the current default state (set by ``output_file``, etc.) is used. (default: None) Returns: None Examples: Typical usage is typically similar to this: .. code-block:: python from bokeh.plotting import figure from bokeh.io import output_notebook, push_notebook, show output_notebook() plot = figure() plot.circle([1,2,3], [4,6,5]) handle = show(plot, notebook_handle=True) # Update the plot title in the earlier cell plot.title.text = "New Title" push_notebook(handle=handle) ''' from ..protocol import Protocol if state is None: state = curstate() if not document: document = state.document if not document: warn("No document to push") return if handle is None: handle = state.last_comms_handle if not handle: warn("Cannot find a last shown plot to update. Call output_notebook() and show(..., notebook_handle=True) before push_notebook()") return events = list(handle.doc._held_events) # This is to avoid having an exception raised for attempting to create a # PATCH-DOC with no events. In the notebook, we just want to silenty # ignore calls to push_notebook when there are no new events if len(events) == 0: return handle.doc._held_events = [] msg = Protocol("1.0").create("PATCH-DOC", events) handle.comms.send(msg.header_json) handle.comms.send(msg.metadata_json) handle.comms.send(msg.content_json) for header, payload in msg.buffers: handle.comms.send(json.dumps(header)) handle.comms.send(buffers=[payload])
[docs]def run_notebook_hook(notebook_type, action, *args, **kw): ''' Run an installed notebook hook with supplied arguments. Args: noteboook_type (str) : Name of an existing installed notebook hook actions (str) : Name of the hook action to execute, ``'doc'`` or ``'app'`` All other arguments and keyword arguments are passed to the hook action exactly as supplied. Returns: Result of the hook action, as-is Raises: RunetimeError If the hook or specific action is not installed ''' if notebook_type not in _HOOKS: raise RuntimeError("no display hook installed for notebook type %r" % notebook_type) if _HOOKS[notebook_type][action] is None: raise RuntimeError("notebook hook for %r did not install %r action" % notebook_type, action) return _HOOKS[notebook_type][action](*args, **kw)
#----------------------------------------------------------------------------- # Dev API #-----------------------------------------------------------------------------
[docs]def destroy_server(server_id): ''' Given a UUID id of a div removed or replaced in the Jupyter notebook, destroy the corresponding server sessions and stop it. ''' server = curstate().uuid_to_server.get(server_id, None) if server is None: log.debug("No server instance found for uuid: %r" % server_id) return try: for session in server.get_sessions(): session.destroy() server.stop() del curstate().uuid_to_server[server_id] except Exception as e: log.debug("Could not destroy server for id %r: %s" % (server_id, e))
[docs]def get_comms(target_name): ''' Create a Jupyter comms object for a specific target, that can be used to update Bokeh documents in the Jupyter notebook. Args: target_name (str) : the target name the Comms object should connect to Returns Jupyter Comms ''' # NOTE: must defer all IPython imports inside functions from ipykernel.comm import Comm return Comm(target_name=target_name, data={})
[docs]def install_jupyter_hooks(): ''' ''' install_notebook_hook('jupyter', load_notebook, show_doc, show_app)
[docs]def load_notebook(resources=None, verbose=False, hide_banner=False, load_timeout=5000): ''' Prepare the IPython notebook for displaying Bokeh plots. Args: resources (Resource, optional) : how and where to load BokehJS from (default: CDN) verbose (bool, optional) : whether to report detailed settings (default: False) hide_banner (bool, optional): whether to hide the Bokeh banner (default: False) load_timeout (int, optional) : Timeout in milliseconds when plots assume load timed out (default: 5000) .. warning:: Clearing the output cell containing the published BokehJS resources HTML code may cause Bokeh CSS styling to be removed. Returns: None ''' global _NOTEBOOK_LOADED from .. import __version__ from ..core.templates import NOTEBOOK_LOAD from ..util.serialization import make_id from ..resources import CDN from ..util.compiler import bundle_all_models if resources is None: resources = CDN if not hide_banner: if resources.mode == 'inline': js_info = 'inline' css_info = 'inline' else: js_info = resources.js_files[0] if len(resources.js_files) == 1 else resources.js_files css_info = resources.css_files[0] if len(resources.css_files) == 1 else resources.css_files warnings = ["Warning: " + msg['text'] for msg in resources.messages if msg['type'] == 'warn'] if _NOTEBOOK_LOADED and verbose: warnings.append('Warning: BokehJS previously loaded') element_id = make_id() html = NOTEBOOK_LOAD.render( element_id = element_id, verbose = verbose, js_info = js_info, css_info = css_info, bokeh_version = __version__, warnings = warnings, ) else: element_id = None _NOTEBOOK_LOADED = resources custom_models_js = bundle_all_models() nb_js = _loading_js(resources, element_id, custom_models_js, load_timeout, register_mime=True) jl_js = _loading_js(resources, element_id, custom_models_js, load_timeout, register_mime=False) if not hide_banner: publish_display_data({'text/html': html}) publish_display_data({ JS_MIME_TYPE : nb_js, LOAD_MIME_TYPE : jl_js })
[docs]def publish_display_data(*args, **kw): ''' ''' # This import MUST be deferred or it will introduce a hard dependency on IPython from IPython.display import publish_display_data return publish_display_data(*args, **kw)
[docs]def show_app(app, state, notebook_url, port=0): ''' Embed a Bokeh serer application in a Jupyter Notebook output cell. Args: app (Application or callable) : A Bokeh Application to embed inline in a Jupyter notebook. state (State) : ** Unused ** notebook_url (str or callable) : The URL of the notebook server that is running the embedded app. If ``notebook_url`` is a string, the value string is parsed to construct the origin and full server URLs. If notebook_url is a callable, it must accept one parameter, which will be the server port, or None. If passed a port, the callable must generate the server URL, otherwise if passed None, it must generate the origin URL for the server. port (int) : A port for the embedded server will listen on. By default the port is 0, which results in the server listening on a random dynamic port. Returns: None ''' logging.basicConfig() from tornado.ioloop import IOLoop from ..server.server import Server loop = IOLoop.current() if callable(notebook_url): origin = notebook_url(None) else: origin = _origin_url(notebook_url) server = Server({"/": app}, io_loop=loop, port=port, allow_websocket_origin=[origin]) server_id = uuid4().hex curstate().uuid_to_server[server_id] = server server.start() if callable(notebook_url): url = notebook_url(server.port) else: url = _server_url(notebook_url, server.port) logging.debug("Server URL is %s" % url) logging.debug("Origin URL is %s" % origin) from ..embed import server_document script = server_document(url, resources=None) publish_display_data({ HTML_MIME_TYPE: script, EXEC_MIME_TYPE: "" }, metadata={ EXEC_MIME_TYPE: {"server_id": server_id} })
[docs]def show_doc(obj, state, notebook_handle): ''' ''' from ..embed.notebook import notebook_content comms_target = make_id() if notebook_handle else None (script, div, cell_doc) = notebook_content(obj, comms_target) publish_display_data({HTML_MIME_TYPE: div}) publish_display_data({JS_MIME_TYPE: script, EXEC_MIME_TYPE: ""}, metadata={EXEC_MIME_TYPE: {"id": obj._id}}) # Comms handling relies on the fact that the cell_doc returned by # notebook copy has models with the same IDs as the original curdoc # they were copied from if comms_target: handle = CommsHandle(get_comms(comms_target), cell_doc) state.document.on_change_dispatch_to(handle) state.last_comms_handle = handle return handle
#----------------------------------------------------------------------------- # Private API #----------------------------------------------------------------------------- _HOOKS = {} _NOTEBOOK_LOADED = None def _loading_js(resources, element_id, custom_models_js, load_timeout=5000, register_mime=True): ''' ''' from ..core.templates import AUTOLOAD_NB_JS return AUTOLOAD_NB_JS.render( elementid = element_id, js_urls = resources.js_files, css_urls = resources.css_files, js_raw = resources.js_raw + [custom_models_js], css_raw = resources.css_raw_str, force = True, timeout = load_timeout, register_mime = register_mime ) def _origin_url(url): ''' ''' if url.startswith("http"): url = url.split("//")[1] return url def _server_url(url, port): ''' ''' if url.startswith("http"): return '%s:%d%s' % (url.rsplit(':', 1)[0], port, "/") else: return 'http://%s:%d%s' % (url.split(':')[0], port, "/") #----------------------------------------------------------------------------- # Code #-----------------------------------------------------------------------------